Zar HJ, Ferkol TW. The global burden of respiratory disease-impact on child health. Pediatr Pulmonol. 2014;49(5):430–4.
Article
Google Scholar
Rudan I, Boschi-Pinto C, Biloglav Z, Mulholland K, Campbell H. Epidemiology and etiology of childhood pneumonia. Bull World Health Organ. 2008;86(5):408–16.
Article
Google Scholar
Hea W. Global, regional, national, and selected subnational levels of stillbirths, neonatal, infant, and under-5 mortality, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015. Lancet. 2017;388(Issue 10053):1725–74.
Google Scholar
Lea L. Global, regional, and national causes of under-5 mortality in 2000–15: an updated systematic analysis with implications for the sustainable development goals. Lancet. 2016;388(Issue 10063):3027–35.
Google Scholar
Amouzou A, Velez L, Tarekegn H, Young M. One is too many: ending child deaths from pneumonia and diarrhoea; 2016.
Google Scholar
Troeger C, Forouzanfar M, Rao PC, Khalil I, Brown A, Swartz S, Fullman N, Mosser J, Thompson RL, Reiner RC Jr. Estimates of the global, regional, and national morbidity, mortality, and aetiologies of lower respiratory tract infections in 195 countries: a systematic analysis for the global burden of disease study 2015. Lancet Infect Dis. 2017;17(11):1133–61.
Article
Google Scholar
Ram PK, Dutt D, Silk BJ, Doshi S, Rudra CB, Abedin J, Goswami D, Fry AM, Brooks WA, Luby SP, et al. Household air quality risk factors associated with childhood pneumonia in urban Dhaka, Bangladesh. Am J Trop Med Hyg. 2014;90(5):968–75.
Article
Google Scholar
Shibata T, Wilson JL, Watson LM, LeDuc A, Meng C, Ansariadi LAR, Manyullei S, Maidin A. Childhood acute respiratory infections and household environment in an eastern Indonesian urban setting. Int J Environ Res Public Health. 2014;11(12):12190–203.
Article
Google Scholar
Karki S, Fitzpatrick AL, Shrestha S. Risk factors for pneumonia in children under 5 years in a teaching Hospital in Nepal. Kathmandu Univ Med J (KUMJ). 2014;12(48):247–52.
CAS
Google Scholar
Panosian Dunavan C. From cookstoves to oxygen concentrators: a few important tools can help tackle global respiratory disparities. Am J Respir Crit Care Med. 2012;186(9):811–2.
Article
Google Scholar
SBea G. Respiratory risks from household air pollution in low and middle income countries. Lancet Respir Med. 2014;2(10):823–60.
Article
Google Scholar
Geno KA, Saad JS, Nahm MH. Discovery of novel pneumococcal serotype 35D, a natural WciG-deficient variant of serotype 35B. J Clin Microbiol. 2017;55(5):1416–25.
Article
Google Scholar
Hammitt LL, Akech DO, Morpeth SC, Karani A, Kihuha N, Nyongesa S, Bwanaali T, Mumbo E, Kamau T, Sharif SK, et al. Population effect of 10-valent pneumococcal conjugate vaccine on nasopharyngeal carriage of Streptococcus pneumoniae and non-typeable Haemophilus influenzae in Kilifi, Kenya: findings from cross-sectional carriage studies. Lancet Glob Health. 2014;2(7):e397–405.
Article
Google Scholar
DMea W. Serotype replacement in disease after pneumococcal vaccination. Lancet. 2011;378(9807):1962–73.
Article
Google Scholar
Roca A, Bojang A, Bottomley C, Gladstone RA, Adetifa JU, Egere U, Burr S, Antonio M, Bentley S, Kampmann B. Effect on nasopharyngeal pneumococcal carriage of replacing PCV7 with PCV13 in the expanded Programme of immunization in the Gambia. Vaccine. 2015;33(51):7144–51.
Article
Google Scholar
Klugman KP. Herd protection induced by pneumococcal conjugate vaccine. Lancet Glob Health. 2014;2(7):e365–6.
Article
Google Scholar
Roca A, Hill PC, Townend J, Egere U, Antonio M, Bojang A, Akisanya A, Litchfield T, Nsekpong DE, Oluwalana C, et al. Effects of community-wide vaccination with PCV-7 on pneumococcal nasopharyngeal carriage in the Gambia: a cluster-randomized trial. PLoS Med. 2011;8(10):e1001107.
Article
Google Scholar
Van Boeckel TP, Gandra S, Ashok A, Caudron Q, Grenfell BT, Levin SA, Laxminarayan R. Global antibiotic consumption 2000 to 2010: an analysis of national pharmaceutical sales data. Lancet Infect Dis. 2014;14(8):742–50.
Article
Google Scholar
Grouzard V, Rigal J, Sutton M. Clinical guidelines: Diagnosis and treatment manual for curative programmes in hospitals and dispensaries: guidance for prescribing. 7th revised ed. Medecins Sans Frontieres. 2007. ISBN 978-2-37585-029-9. http://www.refbooks.msf.org/.
World Health Organization. Antimicrobial resistance: global report on surveillance. World Health Organization; 2014. www.who.int/drugresistance/documents/surveillancereport/en/.
Moyo SJ, Steinbakk M, Aboud S, Mkopi N, Kasubi M, Blomberg B, Manji K, Lyamuya EF, Maselle SY, Langeland N. Penicillin resistance and serotype distribution of Streptococcus pneumoniae in nasopharyngeal carrier children under 5 years of age in Dar Es Salaam, Tanzania. J Med Microbiol. 2012;61(7):952–9.
Article
CAS
Google Scholar
Dayie NT, Arhin RE, Newman MJ, Dalsgaard A, Bisgaard M, Frimodt-Moller N, Slotved HC. Penicillin resistance and serotype distribution of Streptococcus pneumoniae in Ghanaian children less than six years of age. BMC Infect Dis. 2013;13:490.
Article
Google Scholar
Hanke CR, Grijalva CG, Chochua S, Pletz MW, Hornberg C, Edwards KM, Griffin MR, Verastegui H, Gil AI, Lanata CF, et al. Bacterial density, serotype distribution and antibiotic resistance of pneumococcal strains from the nasopharynx of Peruvian children before and after pneumococcal conjugate vaccine 7. Pediatr Infect Dis J. 2016;35(4):432–9.
Article
Google Scholar
Klugman KP, Madhi SA, Huebner RE, Kohberger R, Mbelle N, Pierce N. A trial of a 9-valent pneumococcal conjugate vaccine in children with and those without HIV infection. N Engl J Med. 2003;349(14):1341–8.
Article
CAS
Google Scholar
Tomczyk S, Lynfield R, Schaffner W, Reingold A, Miller L, Petit S, Holtzman C, Zansky SM, Thomas A, Baumbach J. Prevention of antibiotic-nonsusceptible invasive pneumococcal disease with the 13-valent pneumococcal conjugate vaccine. Clin Infect Dis. 2016;62(9):1119–25.
Article
CAS
Google Scholar
Tyrrell GJ, Lovgren M, Chui N, Minion J, Garg S, Kellner JD, Marrie TJ. Serotypes and antimicrobial susceptibilities of invasive Streptococcus pneumoniae pre-and post-seven valent pneumococcal conjugate vaccine introduction in Alberta, Canada, 2000–2006. Vaccine. 2009;27(27):3553–60.
Article
CAS
Google Scholar
ENA 2011(july 9: smartmethodologyorg//smart-emergency-nutrition-assessment/e.
http://www.eucast.org/clinical_breakpoints/: wwweucastorg/clinical_breakpoints/ Accessed 29 Sept 2017.
Neves FP, Cardoso NT, Souza AR, Snyder RE, Marlow MM, Pinto TC, Teixeira LM, Riley LW. Population structure of Streptococcus pneumoniae colonizing children before and after universal use of pneumococcal conjugate vaccines in Brazil: emergence and expansion of the MDR serotype 6C-CC386 lineage. J Antimicrob Chemother. 2018;73(5):1206–12.
Article
Google Scholar
O’Brien KL, Bronsdon MA, Dagan R, Yagupsky P, Janco J, Elliott J, Whitney CG, Yang Y-H, Robinson L-GE, Schwartz B. Evaluation of a medium (STGG) for transport and optimal recovery of Streptococcus pneumoniae from nasopharyngeal secretions collected during field studies. J Clin Microbiol. 2001;39(3):1021–4.
Article
Google Scholar
Heid CA, Stevens J, Livak KJ, Williams PM. Real time quantitative PCR. Genome Res. 1996;6(10):986–94.
Article
CAS
Google Scholar
Usuf E, Bojang A, Camara B, et al. Maternal pneumococcal nasopharyngeal carriage and risk factors for neonatal carriage after the introduction of pneumococcal conjugate vaccines in The Gambia. Clinical microbiology and infection. 2018;24(4):389-95.
Article
CAS
Google Scholar
Ousmane S, Diallo BA, Ouedraogo R, Sanda AA, Soussou AM, Collard JM. Serotype distribution and antimicrobial sensitivity profile of Streptococcus pneumoniae carried in healthy toddlers before PCV13 introduction in Niamey, Niger. PLoS One. 2017;12(1):e0169547.
Article
Google Scholar
Usuf E, Bottomley C, Adegbola RA, Hall A. Pneumococcal carriage in sub-Saharan Africa--a systematic review. PLoS One. 2014;9(1):e85001.
Article
Google Scholar
Rutebemberwa E, Mpeka B, Pariyo G, Peterson S, Mworozi E, Bwanga F, Kallander K. High prevalence of antibiotic resistance in nasopharyngeal bacterial isolates from healthy children in rural Uganda: a cross-sectional study. Ups J Med Sci. 2015;120(4):249–56.
Article
Google Scholar
Satzke C, Turner P, Virolainen-Julkunen A, Adrian PV, Antonio M, Hare KM, Henao-Restrepo AM, Leach AJ, Klugman KP, Porter BD, et al. Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization pneumococcal carriage working group. Vaccine. 2013;32(1):165–79.
Article
Google Scholar
Coles CL, Rahmathullah L, Kanungo R, Katz J, Sandiford D, Devi S, Thulasiraj RD, Tielsch JM. Pneumococcal carriage at age 2 months is associated with growth deficits at age 6 months among infants in South India. J Nutr. 2012;142(6):1088–94.
Article
CAS
Google Scholar
Usuf E, Badji H, Bojang A, Jarju S, Ikumapayi UN, Antonio M, Mackenzie G, Bottomley C. Pneumococcal carriage in rural Gambia prior to the introduction of pneumococcal conjugate vaccine: a population-based survey. Trop Med Int Health : TM & IH. 2015;20(7):871–9.
Article
Google Scholar
Mirzaei Ghazikalayeh H, Moniri R, Moosavi SG, Rezaei M, Yasini M, Valipour M. Serotyping, antibiotic susceptibility and related risk factors aspects of nasopharyngeal carriage of Streptococcus pneumoniae in healthy school students. Iran J Public Health. 2014;43(9):1284–90.
PubMed
PubMed Central
Google Scholar
Hussey S, Purves J, Allcock N, Fernandes VE, Monks PS, Ketley JM, Andrew PW, Morrissey JA. Air pollution alters Staphylococcus aureus and Streptococcus pneumoniae biofilms, antibiotic tolerance and colonisation. Environ Microbiol. 2017;19(5):1868–80.
Article
CAS
Google Scholar
Verhagen LM, Hermsen M, Rivera-Olivero IA, Sisco MC, de Jonge MI, Hermans PWM, de Waard JH. Nasopharyngeal carriage of respiratory pathogens in Warao Amerindians: significant relationship with stunting. Tropical Med Int Health. 2017;22(4):407–14.
Article
Google Scholar
Rylance J, Kankwatira A, Nelson DE, Toh E, Day RB, Lin H, Gao X, Dong Q, Sodergren E, Weinstock GM. Household air pollution and the lung microbiome of healthy adults in Malawi: a cross-sectional study. BMC Microbiol. 2016;16(1):182.
Article
Google Scholar
Adetifa IM, Antonio M, Okoromah CA, Ebruke C, Inem V, Nsekpong D, Bojang A, Adegbola RA. Pre-vaccination nasopharyngeal pneumococcal carriage in a Nigerian population: epidemiology and population biology. PLoS One. 2012;7:e30548.
Article
CAS
Google Scholar
Assefa A, Gelaw B, Shiferaw Y, Tigabu Z. Nasopharyngeal carriage and antimicrobial susceptibility pattern of Streptococcus pneumoniae among pediatric outpatients at Gondar University hospital, north West Ethiopia. Pediatr Neonatol. 2013;54(5):315–21.
Article
Google Scholar
Kamng'ona AW, Hinds J, Bar-Zeev N, Gould KA, Chaguza C, Msefula C, Cornick JE, Kulohoma BW, Gray K, Bentley SD, et al. High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children. BMC Infect Dis. 2015;15:234.
Article
Google Scholar
Kandasamy RGM, Thapa A, Ndimah S, Adhikari N, Murdoch DR, et al. Multi-Serotype Pneumococcal Nasopharyngeal Carriage Prevalence in Vaccine Naïve Nepalese Children, Assessed Using Molecular Serotyping. PloS one. 2015;10(2):e0114286 doi:10.1371/journal. pone.0114286(PLoS ONE 10(2): e0114286. doi:10.1371/journal. pone.0114286):PLoS ONE 10(12): e0114286. doi:0114210.0111371/journal. pone.0114286.
Article
Google Scholar
Kellner JD, McGeer A, Cetron MS, Low DE, Butler JC, Matlow A, Talbot J, Ford-Jones EL. The use of Streptococcus pneumoniae nasopharyngeal isolates from healthy children to predict features of invasive disease. Pediatr Infect Dis J. 1998;17(4):279–86.
Article
CAS
Google Scholar
Vallès X, Flannery B, Roca A, Mandomando I, Sigaúque B, Sanz S, Schuchat A, Levine M, Soriano-Gabarró M, Alonso P. Serotype distribution and antibiotic susceptibility of invasive and nasopharyngeal isolates of Streptococcus pneumoniae among children in rural Mozambique. Tropical Med Int Health. 2006;11(3):358–66.
Article
Google Scholar
Adegbola RA, Hill PC, Secka O, Ikumapayi UN, Lahai G, Greenwood BM, Corrah T. Serotype and antimicrobial susceptibility patterns of isolates of Streptococcus pneumoniae causing invasive disease in the Gambia 1996–2003. Tropical Med Int Health. 2006;11(7):1128–35.
Article
CAS
Google Scholar
Rivera-Olivero IA, Blommaart M, Bogaert D, Hermans PW, de Waard JH. Multiplex PCR reveals a high rate of nasopharyngeal pneumococcal 7-valent conjugate vaccine serotypes co-colonizing indigenous Warao children in Venezuela. J Med Microbiol. 2009;58(Pt 5):584–7.
Article
CAS
Google Scholar
Brugger SD, Frey P, Aebi S, Hinds J, Muhlemann K. Multiple colonization with S. pneumoniae before and after introduction of the seven-valent conjugated pneumococcal polysaccharide vaccine. PLoS One. 2010;5(7):e11638.
Article
Google Scholar
Abdullahi O, Karani A, Tigoi CC, Mugo D, Kungu S, Wanjiru E, Jomo J, Musyimi R, Lipsitch M, Scott JA. The prevalence and risk factors for pneumococcal colonization of the nasopharynx among children in Kilifi District, Kenya. PLoS One. 2012;7(2):e30787.
Article
CAS
Google Scholar
Kobayashi M, Conklin LM, Bigogo G, et al. Pneumococcal carriage and antibiotic susceptibility patterns from two crosssectional colonization surveys among children aged <5 years prior to the introduction of 10-valent pneumococcal conjugate vaccine — Kenya, 2009–2010. BMC Infect Dis. 2017;17:25 10.1186/s12879-016-2103-0(10.1186/s12879-016-2103-0):10.1186/s12879-12016-12103-12870.
Article
Google Scholar
Joloba ML, Bajaksouzian S, Palavecino E, Whalen C, Jacobs MR. High prevalence of carriage of antibiotic-resistant Streptococcus pneumoniae in children in Kampala Uganda. Int J Antimicrob Agents. 2001;17:395–400.
Article
CAS
Google Scholar
Mills RO, Twum-Danso K, Owusu-Agyei S, Donkor ES. Epidemiology of pneumococcal carriage in children under five years of age in Accra, Ghana. Infect Dis (Lond). 2015;47(5):326–31.
Article
Google Scholar
Cheung Y-B, Zaman SM, Nsekpong ED, Van Beneden CA, Adegbola RA, Greenwood B, Cutts FT. Nasopharyngeal carriage of Streptococcus pneumoniae in Gambian children who participated in a 9-valent pneumococcal conjugate vaccine trial and in their younger siblings. Pediatr Infect Dis J. 2009;28(11):990–5.
Article
Google Scholar
Tsakala T, Tona G, Mesia K, Mboma J, Vangu J, Voso S, Kanja G, Kodondi K, Mabela M, Walo R. Évaluation des prescriptions dans le traitement du paludisme et de la gastroentérite en milieu hospitalier: Cas des hôpitaux Bondeko et St Joseph à Kinshasa (République démocratique du Congo). Cahiers d’études et de recherches francophones/Santé. 2005;15(2):119–24.
CAS
Google Scholar
Huebner RE, Wasas A, Mushi A, Mazhani L, Klugman K. Nasopharyngeal carriage and antimicrobial resistance in isolates of Streptococcus pneumoniae and Haemophilus influenzae type b in children under 5 years of age in Botswana. Int J Infect Dis. 1998;3(1):18–25.
Article
CAS
Google Scholar