Table 2 Number of DNA sequence reads and susceptible bacteria
ID | Available read | Human reads (RPM) | Pathogen reads (RPM) | Susceptible pathogens (RPM, RA) |
|---|---|---|---|---|
KD1 | 38,321,575 | 998,404 | 578 | Delftia (173.5, 0.30)Rhodocyclaeceae bacterium Paddy-1 (104.9, 0.18) |
KD2 | 37,562,658 | 998,930 | 365 | Acinetobacter soli (143.7, 0.39) |
KD3 | 39,025,894 | 999,530 | 110 | NA |
KD4 | 28,919,236 | 998,950 | 313 | NA |
KD5 | 67,166,028 | 997,211 | 1867 | Delftia acidovorans (242.0, 0.13) Pseudomonas kribbensis (199.8, 0.11) |
KD6 | 26,744,455 | 999,051 | 239 | NA |
KD7 | 20,929,225 | 997,964 | 663 | Pseudomonas (110.1, 0.17)Roseomonas sp. FDAARGOS_362 (90.0, 0.14) |
KD8 | 30,025,914 | 999,318 | 221 | Acinetobacter soli (90.3, 0.41) |
KD9 | 22,413,817 | 999,062 | 385 | Acinetobacter soli (170.4, 0.44) |
KD10 | 17,319,029 | 996,787 | 2047 | Acinetobacter soli (832.2, 0.41) Pseudomonas kribbensis (194.8, 0.10) |
KD11 | 18,716,804 | 999,331 | 195 | NA |
KD12 | 22,309,536 | 999,609 | 57 | NA |
HC1 | 20,804,952 | 989,280 | 181 | NA |
HC2 | 15,888,618 | 963,349 | 621 | NA |
HC3 | 21,192,125 | 999,500 | 45 | NA |
HC4 | 24,983,027 | 999,016 | 190 | Pseudomonas (122.0, 0.64) |
HC5 | 15,820,231 | 997,747 | 228 | NA |
AC1 | 25,702,148 | 998,293 | 428 | NA |
AC2 | 12,464,308 | 995,548 | 1110 | NA |
AC3 | 2,723,604 | 997,081 | 350 | NA |
AC4 | 19,385,648 | 995,158 | 812 | Staphylococcus (101.2, 0.13) |
AC5 | 10,409,172 | 998,455 | 257 | NA |
AC6 | 13,844,182 | 999,064 | 364 | Delftia acidovorans (54.8, 0.15) |
AC7 | 8,950,442 | 998,940 | 199 | NA |