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Table 2 Number of DNA sequence reads and susceptible bacteria

From: Comprehensive pathogen detection in sera of Kawasaki disease patients by high-throughput sequencing: a retrospective exploratory study

ID Available read Human reads (RPM) Pathogen reads (RPM) Susceptible pathogens (RPM, RA)
KD1 38,321,575 998,404 578 Delftia (173.5, 0.30)Rhodocyclaeceae bacterium Paddy-1 (104.9, 0.18)
KD2 37,562,658 998,930 365 Acinetobacter soli (143.7, 0.39)
KD3 39,025,894 999,530 110 NA
KD4 28,919,236 998,950 313 NA
KD5 67,166,028 997,211 1867 Delftia acidovorans (242.0, 0.13) Pseudomonas kribbensis (199.8, 0.11)
KD6 26,744,455 999,051 239 NA
KD7 20,929,225 997,964 663 Pseudomonas (110.1, 0.17)Roseomonas sp. FDAARGOS_362 (90.0, 0.14)
KD8 30,025,914 999,318 221 Acinetobacter soli (90.3, 0.41)
KD9 22,413,817 999,062 385 Acinetobacter soli (170.4, 0.44)
KD10 17,319,029 996,787 2047 Acinetobacter soli (832.2, 0.41) Pseudomonas kribbensis (194.8, 0.10)
KD11 18,716,804 999,331 195 NA
KD12 22,309,536 999,609 57 NA
HC1 20,804,952 989,280 181 NA
HC2 15,888,618 963,349 621 NA
HC3 21,192,125 999,500 45 NA
HC4 24,983,027 999,016 190 Pseudomonas (122.0, 0.64)
HC5 15,820,231 997,747 228 NA
AC1 25,702,148 998,293 428 NA
AC2 12,464,308 995,548 1110 NA
AC3 2,723,604 997,081 350 NA
AC4 19,385,648 995,158 812 Staphylococcus (101.2, 0.13)
AC5 10,409,172 998,455 257 NA
AC6 13,844,182 999,064 364 Delftia acidovorans (54.8, 0.15)
AC7 8,950,442 998,940 199 NA
  1. A susceptible pathogen is defined as follows: Pathogen genus group of RPM > 100 and pathogen rank group of RA > 0.1 and pathogen rank group is listed as genus or species (bold) level.
  2. RPM Read per Million, RA Relative Abundance.